Chromosome differentiation patterns during cichlid fish evolution.

BACKGROUND: Cichlid fishes have been the subject of increasing scientific interest because of their rapid adaptive radiation which has led to an extensive ecological diversity and their enormous importance to tropical and subtropical aquaculture. To increase our understanding of chromosome evolution among cichlid species, karyotypes of one Asian, 22 African, and 30 South American cichlid species were investigated, and chromosomal data of the family was reviewed. RESULTS: Although there is extensive variation in the karyotypes of cichlid fishes (from 2n = 32 to 2n = 60 chromosomes), the modal chromosome number for South American species was 2n = 48 and the modal number for the African ones was 2n = 44. The only Asian species analyzed, Etroplus maculatus, was observed to have 46 chromosomes. The presence of one or two macro B chromosomes was detected in two African species. The cytogenetic mapping of 18S ribosomal RNA (18S rRNA) gene revealed a variable number of clusters among species varying from two to six. CONCLUSIONS: The karyotype diversification of cichlids seems to have occurred through several chromosomal rearrangements involving fissions, fusions and inversions. It was possible to identify karyotype markers for the subfamilies Pseudocrenilabrinae (African) and Cichlinae (American). The karyotype analyses did not clarify the phylogenetic relationship among the Cichlinae tribes. On the other hand, the two major groups of Pseudocrenilabrinae (tilapiine and haplochromine) were clearly discriminated based on the characteristics of their karyotypes. The cytogenetic mapping of 18S ribosomal RNA (18S rRNA) gene did not follow the chromosome diversification in the family. The dynamic evolution of the repeated units of rRNA genes generates patterns of chromosomal distribution that do not help follows the phylogenetic relationships among taxa. The presence of B chromosomes in cichlids is of particular interest because they may not be represented in the reference genome sequences currently being obtained.

The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies.

BACKGROUND: Diverse plant and animal species have B chromosomes, also known as accessory, extra or supernumerary chromosomes. Despite being widely distributed among different taxa, the genomic nature and genetic behavior of B chromosomes are still poorly understood. RESULTS: In this study we describe the occurrence of B chromosomes in the African cichlid fish Haplochromis obliquidens. One or two large B chromosome(s) occurring in 39.6% of the analyzed individuals (both male and female) were identified. To better characterize the karyotype and assess the nature of the B chromosomes, fluorescence in situ hybridization (FISH) was performed using probes for telomeric DNA repeats, 18S and 5S rRNA genes, SATA centromeric satellites, and bacterial artificial chromosomes (BACs) enriched in repeated DNA sequences. The B chromosomes are enriched in repeated DNAs, especially non-active 18S rRNA gene-like sequences. CONCLUSION: Our results suggest that the B chromosome could have originated from rDNA bearing subtelo/acrocentric A chromosomes through formation of an isochromosome, or by accumulation of repeated DNAs and rRNA gene-like sequences in a small proto-B chromosome derived from the A complement.

Classical and molecular cytogenetic characterization of Agonostomus monticola, a primitive species of Mugilidae (Mugiliformes).

This study reports the first description of the karyotype of Agonostomus monticola, a species belonging to a genus which is considered to be the most primitive among living mugilid fish. Specimens from Panama and Venezuela were cytogenetically analysed by conventional chromosome banding (Ag and base-specific-fluorochrome staining, C-banding) and by fluorescent in situ hybridization (FISH). Agonostomus monticola showed a chromosome complement of 2n = 48, composed of 23 acrocentric and one subtelocentric chromosome pairs and a pericentromeric distribution of the C-positive heterochromatin in all chromosomes. Major ribosomal genes were found to be located on the short arms of the subtelocentric chromosome pair number 24 and minor ribosomal genes in a paracentromeric position of a single medium-sized chromosome pair. All these observed cytogenetic features are similar to those previously described in four representatives of two genera, Liza and Chelon, which are considered to be among the most advanced in the family. Thus, this karyotypic form might represent the plesiomorphic condition for the mullets. This hypothesis regarding the plesiomorphic condition, if confirmed, would shed new light on the previously inferred cytotaxonomic relationships for the studied species of Mugilidae, because the karyotype with 48 acrocentric chromosomes, which has been so far regarded as primitive for the family, would have to be considered as derived.

Cytogenetic studies in three species of Lutjanus (Perciformes: Lutjanidae: Lutjaninae) from the Isla Margarita, Venezuela

In the present study, three species of Lutjaninae, Lutjanus analis, L. griseus and L. synagris, were analyzed by conventional Giemsa staining, C-banding and silver staining, to reveal active Nucleolus Organizer Regions (NORs). Fluorescent in situ hybridization (FISH) was also applied to establish the number and location of the ribosomal gene clusters (18S and 5S rRNA genes). Counts of diploid metaphasic cells revealed a diploid modal chromosome complement composed of 48 acrocentric chromosomes in both L. analis and L. griseus. Two cytotypes were observed in L. synagris: cytotype I, with 2n=48 acrocentric chromosomes, found in 19 specimens, and cytotype II, with 46 acrocentric chromosomes and one large metacentric, found in two specimens. The large metacentric, which possibly originated from a Robertsonian rearrangement, was not found to be sex-related. In the three species, constitutive heterochromatin is located in the centromeres of all chromosomes. NORs were detected on the short arms of a single chromosome pair, number 24 in L. analis and number 6 in both cytotypes of L. synagris. In L. griseus, a polymorphism of the NORs number was detected, by both Ag-staining and FISH, as females show a maximum of three NORs, and males a maximum of six NORs. In all species, minor ribosomal genes were found located on a single chromosome pair. The obtained data, along with those previously reported for other five Lutjanidae species, show that a general chromosome homogeneity occurs within the family, but that derived karyotypes based on Robertsonian rearrangements as well as multiple and variable NORs sites can also be found.

No presente estudo três espécies de Lutjaninae, Lutjanus analis, L. griseus e L. synagris foram analisadas através da coloração convencional com Giemsa, banda C e coloração com nitrato de prata para identificar as Regiões Organizadoras de Nucléolo (NORs) ativas. Hibridação fluorescente in situ (FISH) foi também aplicada para estabelecimento do número e localização dos agrupamentos de genes ribossômicos (18S e 5S rRNA). A contagem de células metafásicas revelou um número diplóide modal de 48 cromossomos acrocêntricos em L. analis e L. griseus. Dois citótipos foram observados em L. synagris: citótipo I com 2n=48 cromossomos acrocêntricos, encontrado em 19 espécimes, e citótipo II com 46 cromossomos acrocêntricos e um grande metacêntrico, encontrado em dois espécimes. O grande metacêntrico, que possivelmente se originou por um rearranjo Robertsoniano, não está relacionado com o sexo. Nas três espécies a heterocromatina constitutiva está localizada nas regiões centroméricas de todos os cromossomos. NORs foram detectadas no braço curto de um único par cromossômico, número 24 em L. analis e número 6 em ambos os citótipos de L. synagris. Em L. griseus, um polimorfismo de número de NORs foi observado, após coloração com prata e por FISH, as fêmeas apresentaram um máximo de três NORs e os machos um máximo de seis NORs. Em todas as espécies os genes ribossômicos 5S foram encontrados em um único par cromossômico. Os dados obtidos, somados aos demais previamente publicados para cinco outras espécies de Lutjanidae, mostram que na família há uma homogeneidade cromossômica, porém também são encontrados cariótipos derivados, originados por rearranjos Robertsonianos, assim como pela ocorrência de sítios múltiplos e variados de NORs.

Physical chromosome mapping of repetitive DNA sequences in Nile tilapia Oreochromis niloticus: evidences for a differential distribution of repetitive elements in the sex chromosomes.

Repetitive DNAs have been extensively applied as physical chromosome markers on comparative studies, identification of chromosome rearrangements and sex chromosomes, chromosome evolution analysis, and applied genetics. Here we report the characterization of repetitive DNA sequences from the Nile tilapia (Oreochromis niloticus) genome by construction and screening of plasmid library enriched with repetitive DNAs, analysis of a BAC-based physical map, and hybridization to chromosomes. The physical mapping of BACs enriched with repetitive sequences and C(o)t-1 DNA (DNA enriched for highly and moderately repetitive DNA sequences) to chromosomes using FISH showed a predominant distribution of repetitive elements in the centromeric and telomeric regions and along the entire length of the largest chromosome pair (X and Y sex chromosomes) of the species. The distribution of repetitive DNAs differed significantly between the p arm of X and Y chromosomes. These findings suggest that repetitive DNAs have had an important role in the differentiation of sex chromosomes.

Comparative cytogenetic and allozyme analysis of Mugil rubrioculus and M. curema (Teleostei: Mugilidae) from Venezuela

Se presentan los resultados del análisis comparativo citogenético y aloenzimático entre las especies simpátricas Mugil rubrioculus y M. curema de Venezuela. Los especímenes de M. rubrioculus presentan un cariotipo con 2n=48 cromosomas exclusivamente acrocéntricos (NF=48), NORs intersticiales localizados en el par cromosómico número 8 y heterocromatina constitutiva distribuida en posición pericentromérica en todos los cromosomas. Los especímenes de M. curema presentan características citogenéticas significativamente diferentes de M. rubrioculus en términos de número cromosómico y morfología (2n=24 cromosomas de dos brazos y NF=48) y localización de las NORs (región terminal del par metacéntrico más grande). El análisis electroforético en gel de almidón de 20 loci presuntivos reveló una diferenciación genética reducida entre las dos especies. De hecho, aún cuando un total de diez alelos específicos hayan sido identificados, no hay loci que no compartan alelos entre las dos especies y el valor de distancia genética (Nei) obtenido (D= 0,060) es más bajo que el obtenido entre otras especies congenéricas de mugílidos. Así, los datos citogenéticos y los alozímicos indican diversos grados de divergencia entre el M. rubrioculus y M. curema. Esto podría reflejar una subestimación de la divergencia molecular por variación críptica o diferentes tasas de evolución molecular y cromosómica. De cualquier manera, este estudio confirma el poder de los datos cariotípicos para discriminar especies de Mugilidae.

5S rDNA variation and its phylogenetic inference in the genus Leporinus (Characiformes: Anostomidae).

5S rDNA sequences have proven to be valuable as genetic markers to distinguish closely related species and also in the understanding of the dynamic of repetitive sequences in the genomes. In the aim to contribute to the knowledge of the evolutionary history of Leporinus (Anostomidae) and also to contribute to the understanding of the 5S rDNA sequences organization in the fish genome, analyses of 5S rDNA sequences were conducted in seven species of this genus. The 5S rRNA gene sequence was highly conserved among Leporinus species, whereas NTS exhibit high levels of variations related to insertions, deletions, microrepeats, and base substitutions. The phylogenetic analysis of the 5S rDNA sequences clustered the species into two clades that are in agreement with cytogenetic and morphological data.